Function reference • ggpubr

Plot One Variable - X, Continuous Visualize distributions.
`ggdensity()`	Density plot
`stat_overlay_normal_density()`	Overlay Normal Density Plot
`gghistogram()`	Histogram plot
`ggecdf()`	Empirical cumulative density function
`ggqqplot()`	QQ Plots
Plot Two Vriables - X and Y, Discrete X and Continuous Y Visualize data distributions by groups.
`ggboxplot()`	Box plot
`ggviolin()`	Violin plot
`ggdotplot()`	Dot plot
`ggstripchart()`	Stripcharts
`ggbarplot()`	Bar plot
`ggline()`	Line plot
`ggerrorplot()`	Visualizing Error
`ggpie()`	Pie chart
`ggdonutchart()`	Donut chart
`ggdotchart()` `theme_cleveland()`	Cleveland's Dot Plots
`ggsummarytable()` `ggsummarystats()` `print(<ggsummarystats>)` `print(<ggsummarystats_list>)`	GGPLOT with Summary Stats Table Under the Plot
Plot Two Continuous Variables Scatter plots
`ggscatter()`	Scatter plot
`stat_cor()`	Add Correlation Coefficients with P-values to a Scatter Plot
`stat_regline_equation()`	Add Regression Line Equation and R-Square to a GGPLOT.
`stat_stars()`	Add Stars to a Scatter Plot
`ggscatterhist()` `print(<ggscatterhist>)`	Scatter Plot with Marginal Histograms
Plot Paired Data Paired data
`ggpaired()`	Plot Paired Data
Comparing Means and Adding p-values
`compare_means()`	Comparison of Means
`stat_compare_means()`	Add Mean Comparison P-values to a ggplot
`stat_pvalue_manual()`	Add Manually P-values to a ggplot
`stat_anova_test()`	Add Anova Test P-values to a GGPlot
`stat_kruskal_test()`	Add Kruskal-Wallis Test P-values to a GGPlot
`stat_welch_anova_test()`	Add Welch One-Way ANOVA Test P-values to a GGPlot
`stat_friedman_test()`	Add Friedman Test P-values to a GGPlot
`stat_pwc()` `geom_pwc()`	Add Pairwise Comparisons P-values to a GGPlot
`stat_bracket()` `geom_bracket()`	Add Brackets with Labels to a GGPlot
`ggadjust_pvalue()`	Adjust p-values Displayed on a GGPlot
Plot Tables and Paragraphs
`ggtexttable()` `ttheme()` `colnames_style()` `rownames_style()` `tbody_style()` `table_cell_font()` `table_cell_bg()` `tab_cell_crossout()` `tab_ncol()` `tab_nrow()` `tab_add_hline()` `tab_add_vline()` `tab_add_border()` `tbody_add_border()` `thead_add_border()` `tab_add_title()` `tab_add_footnote()`	Draw a Textual Table
`ggparagraph()` `drawDetails(<splitText>)`	Draw a Paragraph of Text
`text_grob()`	Create a Text Graphical object
Contingency table
`ggballoonplot()`	Ballon plot
Genomics Plotting data obtained from genomic data analyses.
`ggmaplot()`	MA-plot from means and log fold changes
Themes
`theme_pubr()` `theme_pubclean()` `labs_pubr()` `theme_classic2()` `clean_theme()` `clean_table_theme()`	Publication ready theme
`theme_transparent()`	Create a ggplot with Transparent Background
Graphical Parameters Change graphical parameters such as, titles, legend, colors, axis limits, scale transformation (log, sqrt), axis ticks and plot orientation (vertical, horizontal).
`ggpar()`	Graphical parameters
`show_line_types()`	Line types available in R
`show_point_shapes()`	Point shapes available in R
`font()`	Change the Appearance of Titles and Axis Labels
`rotate()`	Rotate a ggplot Horizontally
`rotate_x_text()` `rotate_y_text()`	Rotate Axes Text
`set_palette()` `change_palette()` `color_palette()` `fill_palette()`	Set Color Palette
`gradient_color()` `gradient_fill()`	Set Gradient Color
`border()`	Set ggplot Panel Border Line
`bgcolor()`	Change ggplot Panel Background Color
`rremove()`	Remove a ggplot Component
`grids()`	Add Grids to a ggplot
`xscale()` `yscale()`	Change Axis Scale: log2, log10 and more
`get_breaks()`	Easy Break Creation for Numeric Axes
`get_legend()`	Extract Legends from a ggplot object
Arrange and Export Multiple ggplots
`ggarrange()`	Arrange Multiple ggplots
`ggexport()`	Export ggplots
`annotate_figure()`	Annotate Arranged Figure
`background_image()`	Add Background Image to ggplot2
Make Programming Easy with GGPlot2
`geom_exec()`	Execute ggplot2 functions
`create_aes()`	Create Aes Mapping from a List
Coordinates
`as_npc()` `as_npcx()` `as_npcy()`	Convert Character Coordinates into Normalized Parent Coordinates (NPC)
`npc_to_data_coord()`	Convert NPC to Data Coordinates
`get_coord()`	Checks and Returns Data Coordinates from Multiple Input Options
Helpers
`facet()`	Facet a ggplot into Multiple Panels
`add_summary()` `mean_se_()` `mean_sd()` `mean_ci()` `mean_range()` `median_iqr()` `median_hilow_()` `median_q1q3()` `median_mad()` `median_range()`	Add Summary Statistics onto a ggplot.
`ggadd()`	Add Summary Statistics or a Geom onto a ggplot
`get_palette()`	Generate Color Palettes
`as_ggplot()`	Storing grid.arrange() arrangeGrob() and plots
`ggtext()`	Text
`ggpubr_options()`	Global Options for GGPubr
`ggpubr_args`	ggpubr General Arguments Description
Data
`diff_express`	Differential gene expression analysis results
`gene_citation`	Gene Citation Index
`gene_expression`	Gene Expression Data
Others
`desc_statby()`	Descriptive statistics by groups
`stat_chull()`	Plot convex hull of a set of points
`stat_conf_ellipse()`	Plot confidence ellipses.
`stat_mean()`	Draw group mean points
`stat_central_tendency()`	Add Central Tendency Measures to a GGPLot
`reexports` `mutate` `group_by` `get_summary_stats`	Objects exported from other packages

Reference

Plot One Variable - X, Continuous

Plot Two Vriables - X and Y, Discrete X and Continuous Y

Plot Two Continuous Variables

Plot Paired Data

Comparing Means and Adding p-values

Plot Tables and Paragraphs

Contingency table

Genomics

Themes

Graphical Parameters

Arrange and Export Multiple ggplots

Make Programming Easy with GGPlot2

Coordinates

Helpers

Data

Others